J5_4CUV_001

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGG*CGAUGAAG*UGAACG*CG*CAU

Length

22 nucleotides

Bulged bases

4CUV|1|4|U|38

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4CUV|1|1|A|20
4CUV|1|1|G|21
4CUV|1|1|G|22
*
4CUV|1|4|C|35
4CUV|1|4|G|36
4CUV|1|4|A|37
4CUV|1|4|U|38
4CUV|1|4|G|39
4CUV|1|4|A|40
4CUV|1|4|A|41
4CUV|1|4|G|42
*
4CUV|1|4|U|102
4CUV|1|4|G|103
4CUV|1|4|A|104
4CUV|1|4|A|105
4CUV|1|4|C|106
4CUV|1|4|G|107
*
4CUV|1|4|C|115
4CUV|1|4|G|116
*
4CUV|1|4|C|137
4CUV|1|4|A|138
4CUV|1|4|U|139

Current chains

Chain 1

25S RRNA

Chain 4

5.8S RRNA

Nearby chains