J5_4D67_002
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 4D67|1|2|C|2265, 4D67|1|2|U|2327
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4D67_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.2011
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D67|1|2|G|1315
4D67|1|2|G|1316
4D67|1|2|A|1317
4D67|1|2|G|1318
4D67|1|2|U|1319
4D67|1|2|C|1320
*
4D67|1|2|G|1495
4D67|1|2|G|1496
4D67|1|2|A|1497
4D67|1|2|C|1498
*
4D67|1|2|G|1637
4D67|1|2|U|1638
4D67|1|2|U|1639
4D67|1|2|C|1640
*
4D67|1|2|G|2264
4D67|1|2|C|2265
4D67|1|2|C|2266
*
4D67|1|2|G|2322
4D67|1|2|C|2323
4D67|1|2|A|2324
4D67|1|2|G|2325
4D67|1|2|A|2326
4D67|1|2|U|2327
4D67|1|2|C|2328
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S RIBOSOMAL PROTEIN L4
- Chain L
- 60S RIBOSOMAL PROTEIN L13
- Chain N
- 60S RIBOSOMAL PROTEIN L15
- Chain a
- 60S RIBOSOMAL PROTEIN L27A
- Chain e
- 60S RIBOSOMAL PROTEIN L32
- Chain t
- 60S RIBOSOMAL PROTEIN L28
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