J5_4ERJ_001

3D structure

PDB id

4ERJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the lysine riboswitch bound to a 6-aminocaproic acid

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGG*CGAA*UG*UGU*GAGAGC

Length

19 nucleotides

Bulged bases

4ERJ|1|A|A|153

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4ERJ_001 not in the Motif Atlas

Homologous match to J5_3D0U_001

Geometric discrepancy: 0.0675

The information below is about J5_3D0U_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_94937.1

Basepair signature

cWW-cWW-tHS-tWH-cWW-cWW-cWW-cWW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

4ERJ|1|A|G|6
4ERJ|1|A|A|7
4ERJ|1|A|G|8
4ERJ|1|A|G|9
*
4ERJ|1|A|C|76
4ERJ|1|A|G|77
4ERJ|1|A|A|78
4ERJ|1|A|A|79
*
4ERJ|1|A|U|110
4ERJ|1|A|G|111
*
4ERJ|1|A|U|137
4ERJ|1|A|G|138
4ERJ|1|A|U|139
*
4ERJ|1|A|G|150
4ERJ|1|A|A|151
4ERJ|1|A|G|152
4ERJ|1|A|A|153
4ERJ|1|A|G|154
4ERJ|1|A|C|155

Current chains

Chain A

Lysine riboswitch RNA

Nearby chains