J5_4ERL_001

3D structure

PDB id

4ERL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the lysine riboswitch bound to a lysine-glycine dipeptide

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGG*CGAA*UG*UGU*GAGAGC

Length

19 nucleotides

Bulged bases

4ERL|1|A|A|153

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4ERL_001 not in the Motif Atlas

Homologous match to J5_3D0U_001

Geometric discrepancy: 0.0459

The information below is about J5_3D0U_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_94937.1

Basepair signature

cWW-cWW-tHS-tWH-cWW-cWW-cWW-cWW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

4ERL|1|A|G|6
4ERL|1|A|A|7
4ERL|1|A|G|8
4ERL|1|A|G|9
*
4ERL|1|A|C|76
4ERL|1|A|G|77
4ERL|1|A|A|78
4ERL|1|A|A|79
*
4ERL|1|A|U|110
4ERL|1|A|G|111
*
4ERL|1|A|U|137
4ERL|1|A|G|138
4ERL|1|A|U|139
*
4ERL|1|A|G|150
4ERL|1|A|A|151
4ERL|1|A|G|152
4ERL|1|A|A|153
4ERL|1|A|G|154
4ERL|1|A|C|155

Current chains

Chain A

Lysine riboswitch RNA

Nearby chains