J5_4IOA_001

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UA*UG

Length

20 nucleotides

Bulged bases

4IOA|1|X|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_80259.1

Basepair signature

cWW-F-cWW-cHW-tSH-cWW-tHH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4IOA|1|X|C|46
4IOA|1|X|G|47
4IOA|1|X|A|48
4IOA|1|X|U|49
4IOA|1|X|G|50
4IOA|1|X|A|51
4IOA|1|X|A|52
4IOA|1|X|G|53
*
4IOA|1|X|C|114
4IOA|1|X|G|115
4IOA|1|X|A|116
4IOA|1|X|A|117
4IOA|1|X|U|118
4IOA|1|X|G|119
*
4IOA|1|X|C|128
4IOA|1|X|A|129
*
4IOA|1|X|U|142
4IOA|1|X|A|143
*
4IOA|1|X|U|154
4IOA|1|X|G|155

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain Q

50S ribosomal protein L23