J5_4IOA_006

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUUA*UUUG*CG*CG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

4IOA|1|X|U|2059, 4IOA|1|X|G|2407, 4IOA|1|X|G|2408, 4IOA|1|X|A|2409, 4IOA|1|X|U|2410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_71788.1

Basepair signature

cWW-F-cWW-F-F-cWW-cWW-cHW-F-cWH-cWW

Number of instances in this motif group

5

Unit IDs

4IOA|1|X|U|2057
4IOA|1|X|U|2058
4IOA|1|X|U|2059
4IOA|1|X|A|2060
*
4IOA|1|X|U|2222
4IOA|1|X|U|2223
4IOA|1|X|U|2224
4IOA|1|X|G|2225
*
4IOA|1|X|C|2237
4IOA|1|X|G|2238
*
4IOA|1|X|C|2260
4IOA|1|X|G|2261
*
4IOA|1|X|C|2406
4IOA|1|X|G|2407
4IOA|1|X|G|2408
4IOA|1|X|A|2409
4IOA|1|X|U|2410
4IOA|1|X|A|2411
4IOA|1|X|A|2412
4IOA|1|X|A|2413
4IOA|1|X|A|2414

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain A

50S ribosomal protein L2

Chain I

50S ribosomal protein L15

Chain T

50S ribosomal protein L27

Chain U

50S ribosomal protein L28