Motif J5_71788.1 Version J5_71788.1 of this group appears in releases 3.3 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | break | 8 | 9 | break | 10 | 11 | break | 12 | 13 | 14 | 15 | 16 | 1-16 | 2-3 | 3-4 | 3-15 | 4-15 | 5-16 | 7-8 | 9-10 | 11-12 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_4IOA_006 | 4IOA | 0.0989 | 5 | X | LSU rRNA | U | 2057 | U | 2058 | A | 2060 | * | U | 2222 | U | 2223 | U | 2224 | G | 2225 | * | C | 2237 | G | 2238 | * | C | 2260 | G | 2261 | * | C | 2406 | A | 2411 | A | 2412 | A | 2413 | A | 2414 | cWW | cWH | cWW | ncsS | cWH | cWW | cWW | cWW | |
| 2 | J5_4WF9_007 | 4WF9 | 0.0897 | 5 | X | LSU rRNA | U | 2101 | U | 2102 | A | 2104 | * | U | 2270 | U | 2271 | U | 2272 | G | 2273 | * | C | 2285 | G | 2286 | * | C | 2308 | G | 2309 | * | C | 2454 | A | 2459 | A | 2460 | A | 2461 | A | 2462 | cWW | cWH | cWW | cWH | cWW | cWW | cWW | ||
| 3 | J5_4Y4O_017 | 4Y4O | 0.0000 | 5 | 2A | LSU rRNA | U | 2074 | U | 2075 | A | 2077 | * | U | 2243 | U | 2244 | U | 2245 | G | 2246 | * | C | 2258 | G | 2259 | * | C | 2281 | G | 2282 | * | C | 2427 | A | 2432 | A | 2433 | A | 2434 | A | 2435 | cWW | cWH | cWW | cWH | cWW | cWW | cWW | ||
| 4 | J5_4V9F_008 | 4V9F | 0.6774 | 3 | 0 | LSU rRNA | U | 2115 | U | 2116 | A | 2118 | * | U | 2276 | U | 2277 | U | 2278 | G | 2279 | * | C | 2292 | G | 2293 | * | C | 2315 | G | 2316 | * | C | 2464 | A | 2467 | A | 2468 | A | 2469 | A | 2470 | cWW | cWH | cWW | tsS | cWH | cWW | cWW | cWW | |
| 5 | J5_5TBW_006 | 5TBW | 0.7218 | 3 | 1 | LSU rRNA | U | 2416 | U | 2417 | A | 2419 | * | U | 2611 | U | 2612 | U | 2613 | G | 2614 | * | C | 2627 | A | 2628 | * | U | 2650 | G | 2651 | * | C | 2798 | A | 2801 | A | 2802 | A | 2803 | A | 2804 | cWW | cWH | cWW | tsS | cWH | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUA*UUUG*CG*CG*CGGAUAAAA | 3 |
| UUUA*UUUG*CG*CG*CAGAAAA | 1 |
| UUGA*UUUG*CA*UG*CAGAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU*UU***GGAUAAA | 3 |
| UU*UU***AGAAA | 1 |
| UG*UU***AGAAA | 1 |
Release history
| Release | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-02-09 | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
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- (5)
- Basepair signature
- cWW-F-cWW-F-F-cWW-cWW-cHW-F-cWH-cWW
- Heat map statistics
- Min 0.09 | Avg 0.38 | Max 0.73
Coloring options: