J5_4L47_003

3D structure

PDB id

4L47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4L47|1|RA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4L47_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0716

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4L47|1|RA|C|47
4L47|1|RA|G|48
4L47|1|RA|A|49
4L47|1|RA|U|50
4L47|1|RA|G|51
4L47|1|RA|A|52
4L47|1|RA|A|53
4L47|1|RA|G|54
*
4L47|1|RA|C|116
4L47|1|RA|G|117
4L47|1|RA|A|118
4L47|1|RA|A|119
4L47|1|RA|U|120
4L47|1|RA|G|121
*
4L47|1|RA|C|130
4L47|1|RA|G|131
*
4L47|1|RA|C|148
4L47|1|RA|A|149
4L47|1|RA|C|150
*
4L47|1|RA|G|176
4L47|1|RA|G|177
4L47|1|RA|G|178

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23