J5_4LFZ_003

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4LFZ|1|RA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4LFZ_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0867

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4LFZ|1|RA|C|47
4LFZ|1|RA|G|48
4LFZ|1|RA|A|49
4LFZ|1|RA|U|50
4LFZ|1|RA|G|51
4LFZ|1|RA|A|52
4LFZ|1|RA|A|53
4LFZ|1|RA|G|54
*
4LFZ|1|RA|C|116
4LFZ|1|RA|G|117
4LFZ|1|RA|A|118
4LFZ|1|RA|A|119
4LFZ|1|RA|U|120
4LFZ|1|RA|G|121
*
4LFZ|1|RA|C|130
4LFZ|1|RA|G|131
*
4LFZ|1|RA|C|148
4LFZ|1|RA|A|149
4LFZ|1|RA|C|150
*
4LFZ|1|RA|G|176
4LFZ|1|RA|G|177
4LFZ|1|RA|G|178

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23