J5_4NXN_002

3D structure

PDB id

4NXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8), bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4NXN|1|A|A|109, 4NXN|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4NXN_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0623

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4NXN|1|A|C|58
4NXN|1|A|A|59
4NXN|1|A|A|60
4NXN|1|A|G|61
*
4NXN|1|A|C|106
4NXN|1|A|G|107
4NXN|1|A|G|108
4NXN|1|A|A|109
4NXN|1|A|C|110
4NXN|1|A|G|111
4NXN|1|A|G|112
4NXN|1|A|G|113
*
4NXN|1|A|C|314
4NXN|1|A|A|315
4NXN|1|A|G|316
*
4NXN|1|A|C|337
4NXN|1|A|A|338
4NXN|1|A|C|339
*
4NXN|1|A|G|350
4NXN|1|A|G|351
4NXN|1|A|C|352
4NXN|1|A|A|353
4NXN|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

ribosomal protein S16

Chain T

ribosomal protein S20