J5_4RQF_001

3D structure

PDB id

4RQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human Seryl-tRNA synthetase dimer complexed with one molecule of tRNAsec

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAUC*GU*AGC*GAG*CC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4RQF_001 not in the Motif Atlas

Homologous match to J5_3RG5_002

Geometric discrepancy: 0.2026

The information below is about J5_3RG5_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_22280.1

Basepair signature

cWW-F-cWW-F-cWW-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4RQF|1|C|G|7
4RQF|1|C|A|8
4RQF|1|C|U|9
4RQF|1|C|C|10
*
4RQF|1|C|G|25
4RQF|1|C|U|26
*
4RQF|1|C|A|44
4RQF|1|C|G|45
4RQF|1|C|C|46
*
4RQF|1|C|G|47|||L
4RQF|1|C|A|48
4RQF|1|C|G|50
*
4RQF|1|C|C|64
4RQF|1|C|C|66

Current chains

Chain C

selenocysteine tRNA

Nearby chains

Chain A

Serine--tRNA ligase, cytoplasmic