J5_4TUB_001

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4TUB_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0691

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4TUB|1|QA|C|36
4TUB|1|QA|U|37
4TUB|1|QA|G|38
4TUB|1|QA|G|39
*
4TUB|1|QA|C|403
4TUB|1|QA|U|404
4TUB|1|QA|U|405
4TUB|1|QA|G|406
*
4TUB|1|QA|C|436
4TUB|1|QA|U|437
4TUB|1|QA|G|438
4TUB|1|QA|A|439
4TUB|1|QA|A|440
4TUB|1|QA|C|442
*
4TUB|1|QA|G|492
4TUB|1|QA|G|493
4TUB|1|QA|U|494
4TUB|1|QA|A|495
4TUB|1|QA|A|496
4TUB|1|QA|U|497
4TUB|1|QA|A|498
4TUB|1|QA|G|500
*
4TUB|1|QA|C|545
4TUB|1|QA|G|546
4TUB|1|QA|A|547
4TUB|1|QA|G|548

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12

Chain YI

50S ribosomal protein L9