J5_4TUB_006
3D structure
- PDB id
- 4TUB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 4TUB|1|RA|U|1301
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4TUB_006 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.0624
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4TUB|1|RA|C|607
4TUB|1|RA|G|608
4TUB|1|RA|A|609
4TUB|1|RA|C|610
4TUB|1|RA|U|611
4TUB|1|RA|C|612
*
4TUB|1|RA|G|715
4TUB|1|RA|G|716
4TUB|1|RA|A|717
4TUB|1|RA|C|718
*
4TUB|1|RA|G|856
4TUB|1|RA|U|857
4TUB|1|RA|U|858
4TUB|1|RA|C|859
*
4TUB|1|RA|G|1240
4TUB|1|RA|C|1241
*
4TUB|1|RA|G|1296
4TUB|1|RA|C|1297
4TUB|1|RA|G|1298
4TUB|1|RA|A|1299
4TUB|1|RA|A|1300
4TUB|1|RA|U|1301
4TUB|1|RA|G|1302
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R8
- 50S ribosomal protein L35
- Chain RF
- 50S ribosomal protein L4
- Chain RP
- 50S ribosomal protein L15
- Chain RU
- 50S ribosomal protein L20
- Chain RV
- 50S ribosomal protein L21
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