3D structure

PDB id
4TUD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CGAUGAAG*CGAAUG*CG*CAC*GGG
Length
22 nucleotides
Bulged bases
4TUD|1|YA|U|50
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4TUD_012 not in the Motif Atlas
Homologous match to J5_9DFE_001
Geometric discrepancy: 0.0596
The information below is about J5_9DFE_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_27223.1
Basepair signature
cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

4TUD|1|YA|C|47
4TUD|1|YA|G|48
4TUD|1|YA|A|49
4TUD|1|YA|U|50
4TUD|1|YA|G|51
4TUD|1|YA|A|52
4TUD|1|YA|A|53
4TUD|1|YA|G|54
*
4TUD|1|YA|C|116
4TUD|1|YA|G|117
4TUD|1|YA|A|118
4TUD|1|YA|A|119
4TUD|1|YA|U|120
4TUD|1|YA|G|121
*
4TUD|1|YA|C|130
4TUD|1|YA|G|131
*
4TUD|1|YA|C|148
4TUD|1|YA|A|149
4TUD|1|YA|C|150
*
4TUD|1|YA|G|176
4TUD|1|YA|G|177
4TUD|1|YA|G|178

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y7
50S ribosomal protein L34
Chain YX
50S ribosomal protein L23

Coloring options:


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