3D structure

PDB id
4TUD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CAG*CGUGC*GAG*CA*UG
Length
15 nucleotides
Bulged bases
4TUD|1|YA|A|532, 4TUD|1|YA|U|562
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4TUD_014 not in the Motif Atlas
Homologous match to J5_9DFE_003
Geometric discrepancy: 0.076
The information below is about J5_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_43153.5
Basepair signature
cWW-cWW-cWW-F-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

4TUD|1|YA|C|531
4TUD|1|YA|A|532
4TUD|1|YA|G|533
*
4TUD|1|YA|C|560
4TUD|1|YA|G|561
4TUD|1|YA|U|562
4TUD|1|YA|G|563
4TUD|1|YA|C|564
*
4TUD|1|YA|G|577
4TUD|1|YA|A|578
4TUD|1|YA|G|579
*
4TUD|1|YA|C|1261
4TUD|1|YA|A|1262
*
4TUD|1|YA|U|2017
4TUD|1|YA|G|2018

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y5
50S ribosomal protein L32
Chain YF
50S ribosomal protein L4
Chain YU
50S ribosomal protein L20
Chain YV
50S ribosomal protein L21
Chain YW
50S ribosomal protein L22

Coloring options:


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