J5_9DFE_003
3D structure
- PDB id
- 9DFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CAG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 9DFE|1|1A|A|532, 9DFE|1|1A|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9DFE|1|1A|C|531
9DFE|1|1A|A|532
9DFE|1|1A|G|533
*
9DFE|1|1A|C|560
9DFE|1|1A|G|561
9DFE|1|1A|U|562
9DFE|1|1A|G|563
9DFE|1|1A|C|564
*
9DFE|1|1A|G|577
9DFE|1|1A|A|578
9DFE|1|1A|G|579
*
9DFE|1|1A|C|1261
9DFE|1|1A|A|1262
*
9DFE|1|1A|U|2017
9DFE|1|1A|G|2018
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1F
- 50S ribosomal protein L4
- Chain 1U
- 50S ribosomal protein L20
- Chain 1V
- 50S ribosomal protein L21
- Chain 1W
- 50S ribosomal protein L22
Coloring options: