J5_4U25_009
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 4U25|1|BA|U|2076, 4U25|1|BA|G|2428, 4U25|1|BA|G|2429, 4U25|1|BA|A|2430, 4U25|1|BA|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4U25_009 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0826
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
4U25|1|BA|U|2074
4U25|1|BA|U|2075
4U25|1|BA|U|2076
4U25|1|BA|A|2077
*
4U25|1|BA|U|2243
4U25|1|BA|U|2244
4U25|1|BA|U|2245
4U25|1|BA|G|2246
*
4U25|1|BA|C|2258
4U25|1|BA|U|2259
*
4U25|1|BA|A|2281
4U25|1|BA|G|2282
*
4U25|1|BA|C|2427
4U25|1|BA|G|2428
4U25|1|BA|G|2429
4U25|1|BA|A|2430
4U25|1|BA|U|2431
4U25|1|BA|A|2432
4U25|1|BA|A|2433
4U25|1|BA|A|2434
4U25|1|BA|A|2435
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain B1
- 50S ribosomal protein L33
- Chain B3
- 50S ribosomal protein L35
- Chain BC
- 50S ribosomal protein L2
- Chain BL
- 50S ribosomal protein L15
- Chain BW
- 50S ribosomal protein L27
- Chain BX
- 50S ribosomal protein L28
Coloring options: