J5_4U25_020
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 4U25|1|DA|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4U25_020 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.0848
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4U25|1|DA|C|584
4U25|1|DA|G|585
4U25|1|DA|A|586
4U25|1|DA|C|587
4U25|1|DA|U|588
4U25|1|DA|U|589
*
4U25|1|DA|A|668
4U25|1|DA|G|669
4U25|1|DA|A|670
4U25|1|DA|C|671
*
4U25|1|DA|G|809
4U25|1|DA|U|810
4U25|1|DA|U|811
4U25|1|DA|C|812
*
4U25|1|DA|G|1195
4U25|1|DA|C|1196
*
4U25|1|DA|G|1250
4U25|1|DA|C|1251
4U25|1|DA|G|1252
4U25|1|DA|A|1253
4U25|1|DA|A|1254
4U25|1|DA|U|1255
4U25|1|DA|G|1256
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D3
- 50S ribosomal protein L35
- Chain DE
- 50S ribosomal protein L4
- Chain DL
- 50S ribosomal protein L15
- Chain DQ
- 50S ribosomal protein L20
- Chain DR
- 50S ribosomal protein L21
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