J5_4UJD_002
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 4UJD|1|A2|C|2265, 4UJD|1|A2|U|2327
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4UJD_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.2011
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJD|1|A2|G|1315
4UJD|1|A2|G|1316
4UJD|1|A2|A|1317
4UJD|1|A2|G|1318
4UJD|1|A2|U|1319
4UJD|1|A2|C|1320
*
4UJD|1|A2|G|1495
4UJD|1|A2|G|1496
4UJD|1|A2|A|1497
4UJD|1|A2|C|1498
*
4UJD|1|A2|G|1637
4UJD|1|A2|U|1638
4UJD|1|A2|U|1639
4UJD|1|A2|C|1640
*
4UJD|1|A2|G|2264
4UJD|1|A2|C|2265
4UJD|1|A2|C|2266
*
4UJD|1|A2|G|2322
4UJD|1|A2|C|2323
4UJD|1|A2|A|2324
4UJD|1|A2|G|2325
4UJD|1|A2|A|2326
4UJD|1|A2|U|2327
4UJD|1|A2|C|2328
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain A3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AC
- 60S RIBOSOMAL PROTEIN L4
- Chain AL
- 60S RIBOSOMAL PROTEIN L13
- Chain AN
- 60S RIBOSOMAL PROTEIN L15
- Chain Aa
- 60S RIBOSOMAL PROTEIN L27A
- Chain Ae
- 60S RIBOSOMAL PROTEIN L32
- Chain At
- 60S RIBOSOMAL PROTEIN L28
Coloring options: