J5_4UJE_002

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGAGUC*GGAC*GUUC*GCC*GCAGAUC

Length

24 nucleotides

Bulged bases

4UJE|1|A2|C|2265, 4UJE|1|A2|U|2327

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4UJE_002 not in the Motif Atlas

Homologous match to J5_8C3A_002

Geometric discrepancy: 0.2011

The information below is about J5_8C3A_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJE|1|A2|G|1315
4UJE|1|A2|G|1316
4UJE|1|A2|A|1317
4UJE|1|A2|G|1318
4UJE|1|A2|U|1319
4UJE|1|A2|C|1320
*
4UJE|1|A2|G|1495
4UJE|1|A2|G|1496
4UJE|1|A2|A|1497
4UJE|1|A2|C|1498
*
4UJE|1|A2|G|1637
4UJE|1|A2|U|1638
4UJE|1|A2|U|1639
4UJE|1|A2|C|1640
*
4UJE|1|A2|G|2264
4UJE|1|A2|C|2265
4UJE|1|A2|C|2266
*
4UJE|1|A2|G|2322
4UJE|1|A2|C|2323
4UJE|1|A2|A|2324
4UJE|1|A2|G|2325
4UJE|1|A2|A|2326
4UJE|1|A2|U|2327
4UJE|1|A2|C|2328

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain CC

60S RIBOSOMAL PROTEIN L4

Chain CL

60S RIBOSOMAL PROTEIN L13

Chain CN

60S RIBOSOMAL PROTEIN L15

Chain Ca

60S RIBOSOMAL PROTEIN L27A

Chain Ce

60S RIBOSOMAL PROTEIN L32

Chain Ct

60S RIBOSOMAL PROTEIN L28