J5_4UJE_006
3D structure
- PDB id
- 4UJE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.9 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 4UJE|1|B1|U|55, 4UJE|1|B1|A|92, 4UJE|1|B1|C|472
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4UJE_006 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.1552
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4UJE|1|B1|C|53
4UJE|1|B1|A|54
4UJE|1|B1|U|55
4UJE|1|B1|G|56
*
4UJE|1|B1|C|89
4UJE|1|B1|G|90
4UJE|1|B1|A|91
4UJE|1|B1|A|92
4UJE|1|B1|U|93
4UJE|1|B1|G|94
4UJE|1|B1|G|95
4UJE|1|B1|C|96
*
4UJE|1|B1|G|434
4UJE|1|B1|A|435
4UJE|1|B1|G|436
*
4UJE|1|B1|C|457
4UJE|1|B1|A|458
4UJE|1|B1|C|459
*
4UJE|1|B1|G|470
4UJE|1|B1|G|471
4UJE|1|B1|C|472
4UJE|1|B1|A|473
4UJE|1|B1|G|474
Current chains
- Chain B1
- 18S Ribosomal RNA
Nearby chains
- Chain BE
- 40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1
- Chain BG
- 40S RIBOSOMAL PROTEIN S6
- Chain BI
- 40S RIBOSOMAL PROTEIN S8
- Chain BJ
- 40S RIBOSOMAL PROTEIN S9
- Chain BY
- 40S RIBOSOMAL PROTEIN S24
- Chain CV
- 60S RIBOSOMAL PROTEIN L23
- Chain CW
- 60S RIBOSOMAL PROTEIN L24
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