J5_4UY8_004

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

4UY8|1|A|U|1758, 4UY8|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4UY8_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0562

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4UY8|1|A|G|1674
4UY8|1|A|C|1675
4UY8|1|A|A|1676
4UY8|1|A|A|1677
4UY8|1|A|A|1678
4UY8|1|A|A|1679
4UY8|1|A|U|1680
4UY8|1|A|G|1681
4UY8|1|A|G|1682
*
4UY8|1|A|C|1706
4UY8|1|A|G|1707
*
4UY8|1|A|U|1751
4UY8|1|A|C|1752
*
4UY8|1|A|G|1756
4UY8|1|A|A|1757
4UY8|1|A|U|1758
4UY8|1|A|A|1759
4UY8|1|A|C|1760
4UY8|1|A|C|1761
4UY8|1|A|A|1762
4UY8|1|A|G|1763
4UY8|1|A|C|1764
*
4UY8|1|A|G|1988
4UY8|1|A|G|1989
4UY8|1|A|C|1990

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain D

50S RIBOSOMAL PROTEIN L3

Chain K

50S RIBOSOMAL PROTEIN L14

Chain P

50S RIBOSOMAL PROTEIN L19