J5_4V49_002

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4V49|1|AA|A|109, 4V49|1|AA|C|352

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V49_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1521

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V49|1|AA|C|58
4V49|1|AA|A|59
4V49|1|AA|A|60
4V49|1|AA|G|61
*
4V49|1|AA|C|106
4V49|1|AA|G|107
4V49|1|AA|G|108
4V49|1|AA|A|109
4V49|1|AA|C|110
4V49|1|AA|G|111
4V49|1|AA|G|112
4V49|1|AA|G|113
*
4V49|1|AA|C|314
4V49|1|AA|A|315
4V49|1|AA|G|316
*
4V49|1|AA|C|337
4V49|1|AA|A|338
4V49|1|AA|C|339
*
4V49|1|AA|G|350
4V49|1|AA|G|351
4V49|1|AA|C|352
4V49|1|AA|A|353
4V49|1|AA|G|354

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AT

30S ribosomal protein S20

Chain BI

50S ribosomal protein L14