J5_4V4A_003

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UA*UG

Length

20 nucleotides

Bulged bases

4V4A|1|B0|U|49, 4V4A|1|B0|G|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V4A_003 not in the Motif Atlas

Homologous match to J5_7A0S_001

Geometric discrepancy: 0.3242

The information below is about J5_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_75459.1

Basepair signature

cWW-F-cWW-cHW-tSH-cWW-tHH-tHS-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V4A|1|B0|C|46
4V4A|1|B0|G|47
4V4A|1|B0|A|48
4V4A|1|B0|U|49
4V4A|1|B0|G|50
4V4A|1|B0|A|51
4V4A|1|B0|A|52
4V4A|1|B0|G|53
*
4V4A|1|B0|C|114
4V4A|1|B0|G|115
4V4A|1|B0|A|116
4V4A|1|B0|A|117
4V4A|1|B0|U|118
4V4A|1|B0|G|119
*
4V4A|1|B0|C|128
4V4A|1|B0|A|129
*
4V4A|1|B0|U|142
4V4A|1|B0|A|143
*
4V4A|1|B0|U|154
4V4A|1|B0|G|155

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain B2

50S ribosomal protein L34