J5_4V4G_006
3D structure
- PDB id
- 4V4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 11.5 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 4V4G|1|BB|U|2059, 4V4G|1|BB|G|2407, 4V4G|1|BB|G|2408, 4V4G|1|BB|A|2409, 4V4G|1|BB|U|2410, 4V4G|1|BB|A|2413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V4G_006 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.3959
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V4G|1|BB|U|2057
4V4G|1|BB|U|2058
4V4G|1|BB|U|2059
4V4G|1|BB|A|2060
*
4V4G|1|BB|U|2222
4V4G|1|BB|U|2223
4V4G|1|BB|U|2224
4V4G|1|BB|G|2225
*
4V4G|1|BB|C|2237
4V4G|1|BB|G|2238
*
4V4G|1|BB|C|2260
4V4G|1|BB|G|2261
*
4V4G|1|BB|C|2406
4V4G|1|BB|G|2407
4V4G|1|BB|G|2408
4V4G|1|BB|A|2409
4V4G|1|BB|U|2410
4V4G|1|BB|A|2411
4V4G|1|BB|A|2412
4V4G|1|BB|A|2413
4V4G|1|BB|A|2414
Current chains
- Chain BB
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B1
- 50S ribosomal protein L31
- Chain B3
- 50S ribosomal protein L33
- Chain BD
- 50S ribosomal protein L2
- Chain BM
- 50S ribosomal protein L15
- Chain BX
- 50S ribosomal protein L27
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