J5_4V4J_010
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V4J_010 not in the Motif Atlas
- Homologous match to J5_4LFB_001
- Geometric discrepancy: 0.2198
- The information below is about J5_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_70703.1
- Basepair signature
- cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V4J|1|y|C|36
4V4J|1|y|U|37
4V4J|1|y|G|38
4V4J|1|y|G|39
*
4V4J|1|y|C|403
4V4J|1|y|U|404
4V4J|1|y|U|405
4V4J|1|y|G|406
*
4V4J|1|y|C|436
4V4J|1|y|U|437
4V4J|1|y|G|438
4V4J|1|y|A|439
4V4J|1|y|A|440
4V4J|1|y|C|442
*
4V4J|1|y|G|492
4V4J|1|y|G|493
4V4J|1|y|U|494
4V4J|1|y|A|495
4V4J|1|y|A|496
4V4J|1|y|U|497
4V4J|1|y|A|498
4V4J|1|y|G|500
*
4V4J|1|y|C|545
4V4J|1|y|G|546
4V4J|1|y|A|547
4V4J|1|y|G|548
Current chains
- Chain y
- 16S RNA
Nearby chains
- Chain e
- 30S ribosomal protein S4
- Chain m
- 30S ribosomal protein S12
Coloring options: