J5_4V4V_001
3D structure
- PDB id
- 4V4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- CUGG*CGUG*CUUUCG*CGAAGUAG*CAAG
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V4V_001 not in the Motif Atlas
- Homologous match to J5_4LFB_001
- Geometric discrepancy: 0.1004
- The information below is about J5_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_70703.1
- Basepair signature
- cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V4V|1|AA|C|36
4V4V|1|AA|U|37
4V4V|1|AA|G|38
4V4V|1|AA|G|39
*
4V4V|1|AA|C|403
4V4V|1|AA|G|404
4V4V|1|AA|U|405
4V4V|1|AA|G|406
*
4V4V|1|AA|C|436
4V4V|1|AA|U|437
4V4V|1|AA|U|438
4V4V|1|AA|U|439
4V4V|1|AA|C|440
4V4V|1|AA|G|442
*
4V4V|1|AA|C|492
4V4V|1|AA|G|494
4V4V|1|AA|A|495
4V4V|1|AA|A|496
4V4V|1|AA|G|497
4V4V|1|AA|U|498
4V4V|1|AA|A|499
4V4V|1|AA|G|500
*
4V4V|1|AA|C|545
4V4V|1|AA|A|546
4V4V|1|AA|A|547
4V4V|1|AA|G|548
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AD
- 30S ribosomal subunit protein S4
- Chain AL
- 30S ribosomal subunit protein S12
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