J5_4V4Z_002

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4V4Z|1|AA|A|109, 4V4Z|1|AA|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V4Z_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1706

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V4Z|1|AA|C|58
4V4Z|1|AA|A|59
4V4Z|1|AA|A|60
4V4Z|1|AA|G|61
*
4V4Z|1|AA|C|106
4V4Z|1|AA|G|107
4V4Z|1|AA|G|108
4V4Z|1|AA|A|109
4V4Z|1|AA|C|110
4V4Z|1|AA|G|111
4V4Z|1|AA|G|112
4V4Z|1|AA|G|113
*
4V4Z|1|AA|C|314
4V4Z|1|AA|A|315
4V4Z|1|AA|G|316
*
4V4Z|1|AA|C|337
4V4Z|1|AA|A|338
4V4Z|1|AA|C|339
*
4V4Z|1|AA|G|350
4V4Z|1|AA|G|351
4V4Z|1|AA|C|352
4V4Z|1|AA|A|353
4V4Z|1|AA|G|354

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AS

30S ribosomal protein S16

Chain AW

30S ribosomal protein S20

Chain BN

50S RIBOSOMAL PROTEIN L14