J5_4V57_015

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

4V57|1|DB|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V57|1|DB|C|584
4V57|1|DB|G|585
4V57|1|DB|A|586
4V57|1|DB|C|587
4V57|1|DB|U|588
4V57|1|DB|U|589
*
4V57|1|DB|A|668
4V57|1|DB|G|669
4V57|1|DB|A|670
4V57|1|DB|C|671
*
4V57|1|DB|G|809
4V57|1|DB|U|810
4V57|1|DB|U|811
4V57|1|DB|C|812
*
4V57|1|DB|G|1195
4V57|1|DB|C|1196
*
4V57|1|DB|G|1250
4V57|1|DB|C|1251
4V57|1|DB|G|1252
4V57|1|DB|A|1253
4V57|1|DB|A|1254
4V57|1|DB|U|1255
4V57|1|DB|G|1256

Current chains

Chain DB

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L35

Chain DE

50S ribosomal protein L4

Chain DL

50S ribosomal protein L15

Chain DQ

50S ribosomal protein L20

Chain DR

50S ribosomal protein L21