J5_4V5A_016

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V5A_016 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.1128

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V5A|1|AA|C|36
4V5A|1|AA|U|37
4V5A|1|AA|G|38
4V5A|1|AA|G|39
*
4V5A|1|AA|C|403
4V5A|1|AA|U|404
4V5A|1|AA|U|405
4V5A|1|AA|G|406
*
4V5A|1|AA|C|436
4V5A|1|AA|U|437
4V5A|1|AA|G|438
4V5A|1|AA|A|439
4V5A|1|AA|A|441
4V5A|1|AA|C|442
*
4V5A|1|AA|G|492
4V5A|1|AA|G|493
4V5A|1|AA|U|494
4V5A|1|AA|A|495
4V5A|1|AA|A|496
4V5A|1|AA|U|498
4V5A|1|AA|A|499
4V5A|1|AA|G|500
*
4V5A|1|AA|C|545
4V5A|1|AA|G|546
4V5A|1|AA|A|547
4V5A|1|AA|G|548

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S RIBOSOMAL PROTEIN S4

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain DI

50S RIBOSOMAL PROTEIN L9