J5_4V5C_012

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4V5C|1|DA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V5C_012 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0715

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V5C|1|DA|C|47
4V5C|1|DA|G|48
4V5C|1|DA|A|49
4V5C|1|DA|U|50
4V5C|1|DA|G|51
4V5C|1|DA|A|52
4V5C|1|DA|A|53
4V5C|1|DA|G|54
*
4V5C|1|DA|C|116
4V5C|1|DA|G|117
4V5C|1|DA|A|118
4V5C|1|DA|A|119
4V5C|1|DA|U|120
4V5C|1|DA|G|121
*
4V5C|1|DA|C|130
4V5C|1|DA|G|131
*
4V5C|1|DA|C|148
4V5C|1|DA|A|149
4V5C|1|DA|C|150
*
4V5C|1|DA|G|176
4V5C|1|DA|G|177
4V5C|1|DA|G|178

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D7

50S RIBOSOMAL PROTEIN L34

Chain DX

50S RIBOSOMAL PROTEIN L23