J5_4V5M_003
3D structure
- PDB id
- 4V5M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.8 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CG*CAC*GGG
- Length
- 22 nucleotides
- Bulged bases
- 4V5M|1|BA|U|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V5M_003 not in the Motif Atlas
- Homologous match to J5_9DFE_001
- Geometric discrepancy: 0.1169
- The information below is about J5_9DFE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4V5M|1|BA|C|47
4V5M|1|BA|G|48
4V5M|1|BA|A|49
4V5M|1|BA|U|50
4V5M|1|BA|G|51
4V5M|1|BA|A|52
4V5M|1|BA|A|53
4V5M|1|BA|G|54
*
4V5M|1|BA|C|116
4V5M|1|BA|G|117
4V5M|1|BA|A|118
4V5M|1|BA|A|119
4V5M|1|BA|U|120
4V5M|1|BA|G|121
*
4V5M|1|BA|C|130
4V5M|1|BA|G|131
*
4V5M|1|BA|C|148
4V5M|1|BA|A|149
4V5M|1|BA|C|150
*
4V5M|1|BA|G|176
4V5M|1|BA|G|177
4V5M|1|BA|G|178
Current chains
- Chain BA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B7
- 50S RIBOSOMAL PROTEIN L34
- Chain BX
- 50S RIBOSOMAL PROTEIN L23
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