J5_4V5S_003

3D structure

PDB id

4V5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4V5S|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V5S_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0872

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V5S|1|BA|C|47
4V5S|1|BA|G|48
4V5S|1|BA|A|49
4V5S|1|BA|U|50
4V5S|1|BA|G|51
4V5S|1|BA|A|52
4V5S|1|BA|A|53
4V5S|1|BA|G|54
*
4V5S|1|BA|C|116
4V5S|1|BA|G|117
4V5S|1|BA|A|118
4V5S|1|BA|A|119
4V5S|1|BA|U|120
4V5S|1|BA|G|121
*
4V5S|1|BA|C|130
4V5S|1|BA|G|131
*
4V5S|1|BA|C|148
4V5S|1|BA|A|149
4V5S|1|BA|C|150
*
4V5S|1|BA|G|176
4V5S|1|BA|G|177
4V5S|1|BA|G|178

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B7

50S RIBOSOMAL PROTEIN L34

Chain BX

50S RIBOSOMAL PROTEIN L23