J5_4V64_006

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

4V64|1|BB|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V64_006 not in the Motif Atlas

Homologous match to J5_5J7L_015

Geometric discrepancy: 0.0651

The information below is about J5_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

4V64|1|BB|C|584
4V64|1|BB|G|585
4V64|1|BB|A|586
4V64|1|BB|C|587
4V64|1|BB|U|588
4V64|1|BB|U|589
*
4V64|1|BB|A|668
4V64|1|BB|G|669
4V64|1|BB|A|670
4V64|1|BB|C|671
*
4V64|1|BB|G|809
4V64|1|BB|U|810
4V64|1|BB|U|811
4V64|1|BB|C|812
*
4V64|1|BB|G|1195
4V64|1|BB|C|1196
*
4V64|1|BB|G|1250
4V64|1|BB|C|1251
4V64|1|BB|G|1252
4V64|1|BB|A|1253
4V64|1|BB|A|1254
4V64|1|BB|U|1255
4V64|1|BB|G|1256

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15

Chain BQ

50S ribosomal protein L20

Chain BR

50S ribosomal protein L21