J5_4V67_012

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4V67|1|DA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V67_012 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0779

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V67|1|DA|C|47
4V67|1|DA|G|48
4V67|1|DA|A|49
4V67|1|DA|U|50
4V67|1|DA|G|51
4V67|1|DA|A|52
4V67|1|DA|A|53
4V67|1|DA|G|54
*
4V67|1|DA|C|116
4V67|1|DA|G|117
4V67|1|DA|A|118
4V67|1|DA|A|119
4V67|1|DA|U|120
4V67|1|DA|G|121
*
4V67|1|DA|C|130
4V67|1|DA|G|131
*
4V67|1|DA|C|148
4V67|1|DA|A|149
4V67|1|DA|C|150
*
4V67|1|DA|G|176
4V67|1|DA|G|177
4V67|1|DA|G|178

Current chains

Chain DA

23S RRNA

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DX

50S ribosomal protein L23