J5_4V68_001

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V68_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0842

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V68|1|AA|C|36
4V68|1|AA|U|37
4V68|1|AA|G|38
4V68|1|AA|G|39
*
4V68|1|AA|C|403
4V68|1|AA|U|404
4V68|1|AA|U|405
4V68|1|AA|G|406
*
4V68|1|AA|C|436
4V68|1|AA|U|437
4V68|1|AA|G|438
4V68|1|AA|A|439
4V68|1|AA|A|441
4V68|1|AA|C|442
*
4V68|1|AA|G|492
4V68|1|AA|G|493
4V68|1|AA|U|494
4V68|1|AA|A|495
4V68|1|AA|A|496
4V68|1|AA|U|498
4V68|1|AA|A|499
4V68|1|AA|G|500
*
4V68|1|AA|C|545
4V68|1|AA|G|546
4V68|1|AA|A|547
4V68|1|AA|G|548

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12

Chain AZ

Elongation factor Tu-A