3D structure

PDB id
4V6F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongation complex of the 70S ribosome with three tRNAs and mRNA.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGAUGAAG*CGAAUG*CG*CAC*GGG
Length
22 nucleotides
Bulged bases
4V6F|1|AA|U|50
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4V6F_001 not in the Motif Atlas
Homologous match to J5_9DFE_001
Geometric discrepancy: 0.0811
The information below is about J5_9DFE_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_01737.2
Basepair signature
cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

4V6F|1|AA|C|47
4V6F|1|AA|G|48
4V6F|1|AA|A|49
4V6F|1|AA|U|50
4V6F|1|AA|G|51
4V6F|1|AA|A|52
4V6F|1|AA|A|53
4V6F|1|AA|G|54
*
4V6F|1|AA|C|116
4V6F|1|AA|G|117
4V6F|1|AA|A|118
4V6F|1|AA|A|119
4V6F|1|AA|U|120
4V6F|1|AA|G|121
*
4V6F|1|AA|C|130
4V6F|1|AA|G|131
*
4V6F|1|AA|C|148
4V6F|1|AA|A|149
4V6F|1|AA|C|150
*
4V6F|1|AA|G|176
4V6F|1|AA|G|177
4V6F|1|AA|G|178

Current chains

Chain AA
23S RIBOSOMAL RNA

Nearby chains

Chain A7
50S RIBOSOMAL PROTEIN L34
Chain AT
50S RIBOSOMAL PROTEIN L23

Coloring options:


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