J5_4V6I_002
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 4V6I|1|DB|U|38, 4V6I|1|DB|A|138
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V6I_002 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.4635
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4V6I|1|DA|A|20
4V6I|1|DA|G|21
4V6I|1|DA|G|22
*
4V6I|1|DB|C|35
4V6I|1|DB|G|36
4V6I|1|DB|A|37
4V6I|1|DB|U|38
4V6I|1|DB|G|39
4V6I|1|DB|A|40
4V6I|1|DB|A|41
4V6I|1|DB|G|42
*
4V6I|1|DB|U|102
4V6I|1|DB|G|103
4V6I|1|DB|A|104
4V6I|1|DB|A|105
4V6I|1|DB|C|106
4V6I|1|DB|G|107
*
4V6I|1|DB|C|115
4V6I|1|DB|G|116
*
4V6I|1|DB|C|137
4V6I|1|DB|A|138
4V6I|1|DB|U|139
Current chains
- Chain DA
- 25S rRNA
- Chain DB
- 5.8S rRNA
Nearby chains
- Chain BP
- 60S ribosomal protein rpL15 (L15e)
- Chain BX
- 60S ribosomal protein rpL25 (L23p)
- Chain Bc
- 60S ribosomal protein rpL35 (L29p)
- Chain Bl
- 60S ribosomal protein rpL37 (L37e)
- Chain Bo
- 60S ribosomal protein rpL39 (L39e)
Coloring options: