J5_4V6L_005

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

4V6L|1|BB|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V6L_005 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.2243

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V6L|1|BB|G|1674
4V6L|1|BB|C|1675
4V6L|1|BB|A|1676
4V6L|1|BB|A|1677
4V6L|1|BB|A|1678
4V6L|1|BB|A|1679
4V6L|1|BB|U|1680
4V6L|1|BB|G|1681
4V6L|1|BB|G|1682
*
4V6L|1|BB|C|1706
4V6L|1|BB|G|1707
*
4V6L|1|BB|U|1751
4V6L|1|BB|C|1752
*
4V6L|1|BB|G|1756
4V6L|1|BB|A|1757
4V6L|1|BB|U|1758
4V6L|1|BB|A|1759
4V6L|1|BB|C|1760
4V6L|1|BB|C|1761
4V6L|1|BB|A|1762
4V6L|1|BB|G|1763
4V6L|1|BB|C|1764
*
4V6L|1|BB|G|1988
4V6L|1|BB|G|1989
4V6L|1|BB|C|1990

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BL

50S ribosomal protein L14

Chain BQ

50S ribosomal protein L19