J5_4V6O_007

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

4V6O|1|BB|C|1675, 4V6O|1|BB|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V6O_007 not in the Motif Atlas

Homologous match to J5_4WF9_005

Geometric discrepancy: 0.4481

The information below is about J5_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V6O|1|BB|G|1674
4V6O|1|BB|C|1675
4V6O|1|BB|A|1676
4V6O|1|BB|A|1677
4V6O|1|BB|A|1678
4V6O|1|BB|A|1679
4V6O|1|BB|U|1680
4V6O|1|BB|G|1681
4V6O|1|BB|G|1682
*
4V6O|1|BB|C|1706
4V6O|1|BB|G|1707
*
4V6O|1|BB|U|1751
4V6O|1|BB|C|1752
*
4V6O|1|BB|G|1756
4V6O|1|BB|A|1757
4V6O|1|BB|U|1758
4V6O|1|BB|A|1759
4V6O|1|BB|C|1760
4V6O|1|BB|C|1761
4V6O|1|BB|A|1762
4V6O|1|BB|G|1763
4V6O|1|BB|C|1764
*
4V6O|1|BB|G|1988
4V6O|1|BB|G|1989
4V6O|1|BB|C|1990

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BM

50S ribosomal protein L14

Chain BR

50S ribosomal protein L19