3D structure

PDB id
4V6T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
Experimental method
ELECTRON MICROSCOPY
Resolution
8.3 Å

Loop

Sequence
CAG*CGUAC*GGG*CA*UG
Length
15 nucleotides
Bulged bases
4V6T|1|BA|A|532, 4V6T|1|BA|U|562
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4V6T_005 not in the Motif Atlas
Homologous match to J5_5J7L_014
Geometric discrepancy: 0.0531
The information below is about J5_5J7L_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_43153.5
Basepair signature
cWW-cWW-cWW-F-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

4V6T|1|BA|C|531
4V6T|1|BA|A|532
4V6T|1|BA|G|533
*
4V6T|1|BA|C|560
4V6T|1|BA|G|561
4V6T|1|BA|U|562
4V6T|1|BA|A|563
4V6T|1|BA|C|564
*
4V6T|1|BA|G|577
4V6T|1|BA|G|578
4V6T|1|BA|G|579
*
4V6T|1|BA|C|1261
4V6T|1|BA|A|1262
*
4V6T|1|BA|U|2017
4V6T|1|BA|G|2018

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B0
50S ribosomal protein L32
Chain BE
50S ribosomal protein L4
Chain BQ
50S ribosomal protein L20
Chain BR
50S ribosomal protein L21
Chain BS
50S ribosomal protein L22

Coloring options:


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