J5_4V6T_007

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

4V6T|1|BA|U|1758, 4V6T|1|BA|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V6T_007 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0478

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V6T|1|BA|G|1674
4V6T|1|BA|C|1675
4V6T|1|BA|A|1676
4V6T|1|BA|A|1677
4V6T|1|BA|A|1678
4V6T|1|BA|A|1679
4V6T|1|BA|U|1680
4V6T|1|BA|G|1681
4V6T|1|BA|G|1682
*
4V6T|1|BA|C|1706
4V6T|1|BA|G|1707
*
4V6T|1|BA|U|1751
4V6T|1|BA|C|1752
*
4V6T|1|BA|G|1756
4V6T|1|BA|A|1757
4V6T|1|BA|U|1758
4V6T|1|BA|A|1759
4V6T|1|BA|C|1760
4V6T|1|BA|C|1761
4V6T|1|BA|A|1762
4V6T|1|BA|G|1763
4V6T|1|BA|C|1764
*
4V6T|1|BA|G|1988
4V6T|1|BA|G|1989
4V6T|1|BA|C|1990

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L3

Chain BK

50S ribosomal protein L14

Chain BP

50S ribosomal protein L19