J5_4V6X_007
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 4V6X|1|B2|U|55, 4V6X|1|B2|A|92, 4V6X|1|B2|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V6X_007 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.1083
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V6X|1|B2|C|53
4V6X|1|B2|A|54
4V6X|1|B2|U|55
4V6X|1|B2|G|56
*
4V6X|1|B2|C|89
4V6X|1|B2|G|90
4V6X|1|B2|A|91
4V6X|1|B2|A|92
4V6X|1|B2|U|93
4V6X|1|B2|G|94
4V6X|1|B2|G|95
4V6X|1|B2|C|96
*
4V6X|1|B2|G|434
4V6X|1|B2|A|435
4V6X|1|B2|G|436
*
4V6X|1|B2|C|457
4V6X|1|B2|A|458
4V6X|1|B2|C|459
*
4V6X|1|B2|G|470
4V6X|1|B2|G|471
4V6X|1|B2|C|472
4V6X|1|B2|A|473
4V6X|1|B2|G|474
Current chains
- Chain B2
- 18S ribosomal RNA
Nearby chains
- Chain AE
- 40S ribosomal protein S4, X isoform
- Chain AG
- 40S ribosomal protein S6
- Chain AI
- 40S ribosomal protein S8
- Chain AY
- 40S ribosomal protein S24
- Chain CV
- 60S ribosomal protein L23
Coloring options: