J5_4V74_003

3D structure

PDB id

4V74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

4V74|1|AA|A|109, 4V74|1|AA|C|352, 4V74|1|AA|A|353

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V74_003 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.264

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V74|1|AA|C|58
4V74|1|AA|A|59
4V74|1|AA|A|60
4V74|1|AA|G|61
*
4V74|1|AA|C|106
4V74|1|AA|G|107
4V74|1|AA|G|108
4V74|1|AA|A|109
4V74|1|AA|C|110
4V74|1|AA|G|111
4V74|1|AA|G|112
4V74|1|AA|G|113
*
4V74|1|AA|C|314
4V74|1|AA|A|315
4V74|1|AA|C|316
*
4V74|1|AA|G|337
4V74|1|AA|A|338
4V74|1|AA|C|339
*
4V74|1|AA|G|350
4V74|1|AA|G|351
4V74|1|AA|C|352
4V74|1|AA|A|353
4V74|1|AA|G|354

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AT

30S ribosomal protein S20

Chain BK

50S ribosomal protein L14