J5_4V76_004

3D structure

PDB id

4V76 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

4V76|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V76_004 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.1739

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V76|1|BA|C|47
4V76|1|BA|G|48
4V76|1|BA|A|49
4V76|1|BA|U|50
4V76|1|BA|G|51
4V76|1|BA|A|52
4V76|1|BA|A|53
4V76|1|BA|G|54
*
4V76|1|BA|C|116
4V76|1|BA|G|117
4V76|1|BA|A|118
4V76|1|BA|A|119
4V76|1|BA|U|120
4V76|1|BA|G|121
*
4V76|1|BA|C|130
4V76|1|BA|A|131
*
4V76|1|BA|U|148
4V76|1|BA|A|149
4V76|1|BA|U|150
*
4V76|1|BA|A|176
4V76|1|BA|G|177
4V76|1|BA|G|178

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BY

50S ribosomal protein L29