J5_4V77_003

3D structure

PDB id

4V77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

4V77|1|AA|C|352, 4V77|1|AA|A|353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V77_003 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.297

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V77|1|AA|C|58
4V77|1|AA|A|59
4V77|1|AA|A|60
4V77|1|AA|G|61
*
4V77|1|AA|C|106
4V77|1|AA|G|107
4V77|1|AA|G|108
4V77|1|AA|A|109
4V77|1|AA|C|110
4V77|1|AA|G|111
4V77|1|AA|G|112
4V77|1|AA|G|113
*
4V77|1|AA|C|314
4V77|1|AA|A|315
4V77|1|AA|C|316
*
4V77|1|AA|G|337
4V77|1|AA|A|338
4V77|1|AA|C|339
*
4V77|1|AA|G|350
4V77|1|AA|G|351
4V77|1|AA|C|352
4V77|1|AA|A|353
4V77|1|AA|G|354

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AT

30S ribosomal protein S20

Chain BK

50S ribosomal protein L14