J5_4V7E_002
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 4V7E|1|Aa|U|1439
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V7E_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.1296
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V7E|1|Aa|G|662
4V7E|1|Aa|G|663
4V7E|1|Aa|A|664
4V7E|1|Aa|G|665
4V7E|1|Aa|U|666
4V7E|1|Aa|C|667
*
4V7E|1|Aa|G|802
4V7E|1|Aa|G|803
4V7E|1|Aa|A|804
4V7E|1|Aa|C|805
*
4V7E|1|Aa|G|944
4V7E|1|Aa|U|945
4V7E|1|Aa|U|946
4V7E|1|Aa|C|947
*
4V7E|1|Aa|G|1379
4V7E|1|Aa|C|1380
*
4V7E|1|Aa|G|1434
4V7E|1|Aa|C|1435
4V7E|1|Aa|A|1436
4V7E|1|Aa|G|1437
4V7E|1|Aa|A|1438
4V7E|1|Aa|U|1439
4V7E|1|Aa|C|1440
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain Ac
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CC
- 60S ribosomal protein L4
- Chain CL
- 60S ribosomal protein L13E
- Chain Ca
- 60S ribosomal protein L15
- Chain Ce
- 60S ribosomal protein L32E
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