J5_4V7I_001

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

4V7I|1|A8|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V7I_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.1855

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V7I|1|A8|C|47
4V7I|1|A8|G|48
4V7I|1|A8|A|49
4V7I|1|A8|U|50
4V7I|1|A8|G|51
4V7I|1|A8|A|52
4V7I|1|A8|A|53
4V7I|1|A8|G|54
*
4V7I|1|A8|C|116
4V7I|1|A8|G|117
4V7I|1|A8|A|118
4V7I|1|A8|A|119
4V7I|1|A8|U|120
4V7I|1|A8|G|121
*
4V7I|1|A8|C|130
4V7I|1|A8|A|131
*
4V7I|1|A8|U|148
4V7I|1|A8|A|149
4V7I|1|A8|U|150
*
4V7I|1|A8|A|176
4V7I|1|A8|G|177
4V7I|1|A8|G|178

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L34