3D structure

PDB id
4V7I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosome-SecY complex.
Experimental method
ELECTRON MICROSCOPY
Resolution
9.6 Å

Loop

Sequence
CAG*CGUAC*GGG*CA*UG
Length
15 nucleotides
Bulged bases
4V7I|1|A8|A|532, 4V7I|1|A8|U|562
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4V7I_002 not in the Motif Atlas
Homologous match to J5_5J7L_014
Geometric discrepancy: 0.1969
The information below is about J5_5J7L_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_43153.5
Basepair signature
cWW-cWW-cWW-F-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

4V7I|1|A8|C|531
4V7I|1|A8|A|532
4V7I|1|A8|G|533
*
4V7I|1|A8|C|560
4V7I|1|A8|G|561
4V7I|1|A8|U|562
4V7I|1|A8|A|563
4V7I|1|A8|C|564
*
4V7I|1|A8|G|577
4V7I|1|A8|G|578
4V7I|1|A8|G|579
*
4V7I|1|A8|C|1261
4V7I|1|A8|A|1262
*
4V7I|1|A8|U|2017
4V7I|1|A8|G|2018

Current chains

Chain A8
23S ribosomal RNA

Nearby chains

Chain A0
50S ribosomal protein L32
Chain AE
50S ribosomal protein L4
Chain AJ
50S ribosomal protein L13
Chain AQ
50S ribosomal protein L20
Chain AR
50S ribosomal protein L21
Chain AS
50S ribosomal protein L22

Coloring options:


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