J5_4V7I_004

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

4V7I|1|A8|U|1758, 4V7I|1|A8|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V7I_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.3056

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V7I|1|A8|G|1674
4V7I|1|A8|C|1675
4V7I|1|A8|A|1676
4V7I|1|A8|A|1677
4V7I|1|A8|A|1678
4V7I|1|A8|A|1679
4V7I|1|A8|U|1680
4V7I|1|A8|G|1681
4V7I|1|A8|G|1682
*
4V7I|1|A8|C|1706
4V7I|1|A8|G|1707
*
4V7I|1|A8|U|1751
4V7I|1|A8|C|1752
*
4V7I|1|A8|G|1756
4V7I|1|A8|A|1757
4V7I|1|A8|U|1758
4V7I|1|A8|A|1759
4V7I|1|A8|C|1760
4V7I|1|A8|C|1761
4V7I|1|A8|A|1762
4V7I|1|A8|G|1763
4V7I|1|A8|C|1764
*
4V7I|1|A8|G|1988
4V7I|1|A8|G|1989
4V7I|1|A8|C|1990

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L3

Chain AK

50S ribosomal protein L14

Chain AP

50S ribosomal protein L19